Club América

Navarrete was Club América's only signing to bolster the squad before the Clausura 2006, after Dorados de Sinaloa goalkeeper Cirilo Saucedo turned down the team after an initial agreement.

During the Clausura 2006 season, Navarrete filled in for starting goalkeeper Guillermo Ochoa after Ochoa was named to the Mexican 2006 FIFA World Cup squad.

For the Clausura 2007 away fixture versus C.F. Pachuca, Navarrete started in the goal for Ochoa, who had returned injured from the game between Mexico and Venezuela.

Navarrete also filled in for Ochoa for the SuperLiga, in which America got eliminated. He also started the first match against Puebla. He had a great performance with 3 clean sheets out of the 4 when played in the Apertura 2007.

In the first game of the 2009 World Football Challenge, Navarrete gave up one goal to Ivan Ramiro Cordoba of Inter Milan, but managed to hold on for a 1–1 score after ninety minutes. America later won 5–4 in penalty kicks in front of a largely pro-America crowd. In the second game, they played against AC Milan in which Club America won the game 2–1. In the final game, America played against Chelsea FC, where they lost 0–2.

Navarrete remained America's second-choice keeper, waiting for a chance to become the starter when Ochoa left for Europe. Following the Clausura 2011, Navarrete declared that if Ochoa remained at the club, then Navarrete would enter the supplemental draft.^[2] Following Ochoa's signing with France's AC Ajaccio, Navarrete became America's starting goalkeeper. However, America would go on to have a poor season, winning only three games and given up many goals. As a result, Navarrete was loaned out to Atlante.