40S ribosomal protein S16

RPS16
Available structures
PDB	Ortholog search: PDBe RCSB
List of PDB id codes
	4UG0, 4V6X, 5A2Q, 5AJ0, 4KZY, 3J7R, 4D61, 4KZX, 4D5L, 4V5Z, 5FLX, 4UJD, 3J7P, 4KZZ, 4UJE, 4UJC
Identifiers
Aliases	RPS16, S16, ribosomal protein S16
External IDs	OMIM: 603675 MGI: 98118 HomoloGene: 794 GeneCards: RPS16
Gene location (Human)
Chr.	Chromosome 19 (human)
End	39,435,949 bp
Gene location (Mouse)
Chr.	Chromosome 7 (mouse)
End	28,052,580 bp
RNA expression pattern
	Top expressed in
	germinal epithelium; ; visceral pleura; ; parietal pleura; ; superficial temporal artery; ; nipple; ; cardia; ; pericardium; ; urethra; ; vulva; ; pylorus;
	Top expressed in
	yolk sac; ; spleen; ; thymus; ; morula; ; lip; ; pancreas; ; islet of Langerhans; ; uterus; ; lung; ; zone of skin;
	More reference expression data
	n/a
Gene ontology
Molecular function	structural constituent of ribosome; protein binding; RNA binding;
Cellular component	cytosol; ribosome; membrane; focal adhesion; small ribosomal subunit; extracellular exosome; nucleoplasm; extracellular matrix; cytosolic small ribosomal subunit;
Biological process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); viral transcription; SRP-dependent cotranslational protein targeting to membrane; translational initiation; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ribosomal small subunit biogenesis; protein biosynthesis; rRNA processing; cellular response to leukemia inhibitory factor; liver regeneration;
	Sources:Amigo / QuickGO
Orthologs
	6217
	20055
	ENSG00000105193
	ENSMUSG00000037563
	P62249
	P14131
	NM_001020; NM_001321111; NM_001363860
	NM_013647
	NP_001011; NP_001308040; NP_001350789
	NP_038675
	Wikidata
View/Edit Human	View/Edit Mouse

Length: 146 amino acids

40S ribosomal protein S16' is a protein that in humans is encoded by the RPS16 gene.^[5]^[6]^[7]

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S9P family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome.^[7]

Interactions

Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a ribosomal protein family that is divided into three groups based on sequence similarity:

* Eubacterial S16.

* Algal and plant chloroplast S16.

* Cyanelle S16.

* Neurospora crassa mitochondrial S24 (cyt-21).

S16 proteins have about 100 amino-acid residues. There are two paralogues in Arabidopsis thaliana, RPS16-1 (chloroplastic) and RPS16-2 (targeted to the chloroplast and the mitochondrion)

[4].

RPS16 has been shown to interact with CDC5L.^[8]

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000105193 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000037563 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Batra SK, Metzgar RS, Hollingsworth MA (May 1991). "Molecular cloning and sequence analysis of the human ribosomal protein S16". J Biol Chem. 266 (11): 6830–3. doi:10.1016/S0021-9258(20)89575-1. PMID 2016298.
↑ Kenmochi N, Kawaguchi T, Rozen S, Davis E, Goodman N, Hudson TJ, Tanaka T, Page DC (August 1998). "A map of 75 human ribosomal protein genes". Genome Res. 8 (5): 509–23. doi:10.1101/gr.8.5.509. PMID 9582194.
1 2 "Entrez Gene: RPS16 ribosomal protein S16".
↑ Ajuh P, Kuster B, Panov K, Zomerdijk J C, Mann M, Lamond A I (December 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. ENGLAND. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. ISSN 0261-4189. PMC 305846. PMID 11101529.

Wool IG, Chan YL, Glück A (1996). "Structure and evolution of mammalian ribosomal proteins". Biochem. Cell Biol. 73 (11–12): 933–47. doi:10.1139/o95-101. PMID 8722009.
Kato S, Sekine S, Oh SW, et al. (1995). "Construction of a human full-length cDNA bank". Gene. 150 (2): 243–50. doi:10.1016/0378-1119(94)90433-2. PMID 7821789.
Vladimirov SN, Ivanov AV, Karpova GG, et al. (1996). "Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing, and mass spectrometry". Eur. J. Biochem. 239 (1): 144–9. doi:10.1111/j.1432-1033.1996.0144u.x. PMID 8706699.
Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
Lei XH, Shen X, Xu XQ, Bernstein HS (2001). "Human Cdc5, a regulator of mitotic entry, can act as a site-specific DNA binding protein". J. Cell Sci. 113 Pt 24 (24): 4523–31. doi:10.1242/jcs.113.24.4523. PMID 11082045.
Ajuh P, Kuster B, Panov K, et al. (2001). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. PMC 305846. PMID 11101529.
Andersen JS, Lyon CE, Fox AH, et al. (2002). "Directed proteomic analysis of the human nucleolus". Curr. Biol. 12 (1): 1–11. doi:10.1016/S0960-9822(01)00650-9. PMID 11790298. S2CID 14132033.
Yoshihama M, Uechi T, Asakawa S, et al. (2002). "The human ribosomal protein genes: sequencing and comparative analysis of 73 genes". Genome Res. 12 (3): 379–90. doi:10.1101/gr.214202. PMC 155282. PMID 11875025.
Karan D, Kelly DL, Rizzino A, et al. (2002). "Expression profile of differentially-regulated genes during progression of androgen-independent growth in human prostate cancer cells". Carcinogenesis. 23 (6): 967–75. doi:10.1093/carcin/23.6.967. PMID 12082018.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Bouwmeester T, Bauch A, Ruffner H, et al. (2004). "A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway". Nat. Cell Biol. 6 (2): 97–105. doi:10.1038/ncb1086. PMID 14743216. S2CID 11683986.
Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
Yu Y, Ji H, Doudna JA, Leary JA (2005). "Mass spectrometric analysis of the human 40S ribosomal subunit: native and HCV IRES-bound complexes". Protein Sci. 14 (6): 1438–46. doi:10.1110/ps.041293005. PMC 2253395. PMID 15883184.
Tu LC, Yan X, Hood L, Lin B (2007). "Proteomics analysis of the interactome of N-myc downstream regulated gene 1 and its interactions with the androgen response program in prostate cancer cells". Mol. Cell. Proteomics. 6 (4): 575–88. doi:10.1074/mcp.M600249-MCP200. PMID 17220478.
Ewing RM, Chu P, Elisma F, et al. (2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.

This article is issued from Wikipedia. The text is licensed under Creative Commons - Attribution - Sharealike. Additional terms may apply for the media files.

[refGRCh38Ensembl-1] 1 2 3 GRCh38: Ensembl release 89: ENSG00000105193 - Ensembl, May 2017

[refGRCm38Ensembl-2] 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000037563 - Ensembl, May 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid2016298-5] Batra SK, Metzgar RS, Hollingsworth MA (May 1991). "Molecular cloning and sequence analysis of the human ribosomal protein S16". J Biol Chem. 266 (11): 6830–3. doi:10.1016/S0021-9258(20)89575-1. PMID 2016298.

[pmid9582194-6] Kenmochi N, Kawaguchi T, Rozen S, Davis E, Goodman N, Hudson TJ, Tanaka T, Page DC (August 1998). "A map of 75 human ribosomal protein genes". Genome Res. 8 (5): 509–23. doi:10.1101/gr.8.5.509. PMID 9582194.

[entrez-7] 1 2 "Entrez Gene: RPS16 ribosomal protein S16".

[pmid11101529-8] Ajuh P, Kuster B, Panov K, Zomerdijk J C, Mann M, Lamond A I (December 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. ENGLAND. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. ISSN 0261-4189. PMC 305846. PMID 11101529.

[1]

[2]

[3]

[4]

[5]

[6]

[7]

[8]

Interactions

References

Further reading